Index for SRC

Matlab files in this directory:

ADCFREE	compute the free diffusion coefficients and the free signal
BTPDE	solve Bloch-Torrey equation
BTPDE_HARDI	compute the ADC from Bloch-Torrey equation for ngdir directions and interpolate to 900 directions uniformly distributed on the sphere.
FIT_SIGNAL	fit the ADC from the dMRI signal
GET_VOL_SA	compute surface to volume ratio
HADC	diffusion equation (zero IC) to get the time-dependent diffusion coefficient
HADC_HARDI	compute the ADC from HADC model for ngdir directions and interpolate to 900 directions uniformly distributed on the sphere.
PLOT_ADC	plot ADC
PLOT_CELLS	plot cells of canonical configuration
PLOT_FEMESH	plot the FE meshes of Inner, Outer, ECS compartments
PLOT_GEOMETRY_INFO	plot information of the geometry
PLOT_HARDI	plot ngdir original directions in which the HADC was simulated and 900 interpolated directions
PLOT_MAGNETIZATION	plot magnetization from solving Bloch-Torrey equation
PLOT_SIGNAL	plot signal from solving the Bloch-Torrey equation
PLOT_SURFACE_TRIANGULATION	plot surface triangulation
PLOT_TIMING	plot elapsed time
PREPARE_PDE	create initial data for solving PDE
STA	compute the ADC in the short diffusion time regime
create_femesh_fromcells	create FE mesh from cells
create_geom	create cells (canonical configuration)
read_params_cells	read cells parameters
read_params_simul_domain	read simulation domain parameters
read_params_simul_experi	read experiment parameters
read_tetgen	create FE mesh on canonical configuration; bend and twist the FE mesh nodes by analytical transformation